Retrieve the Target Full Name for a given SeqId (or set of SeqIds) and add that information to a data frame. The Target Full Name can be found in an ADAT file and represents the full name of the protein target of a primary SOMAmer reagent.
Note: You can retrieve a list of Target Full Name values for a given set of
SeqIds with mget(seqids, SomaScanTARGETFULLNAME), where seqids is a
character vector of SeqIds. To retrieve a data frame of all Target Full
Name values present in the package, use toTable(SomaScanTARGETFULLNAME).
Arguments
- data
a data frame generated by a
selectquery. This data frame can have any number of columns, but must contain a PROBEID column. This will be used to match the Target Full Name.
Examples
seqs <- withr::with_seed(123, sample(keys(SomaScan.db), 5))
res <- select(SomaScan.db, keys = seqs, columns = "UNIPROT")
#> 'select()' returned 1:many mapping between keys and columns
addTargetFullName(res)
#> PROBEID
#> 1 18943-4
#> 2 18943-4
#> 3 18943-4
#> 4 18943-4
#> 5 18943-4
#> 6 18943-4
#> 7 19168-71
#> 8 19168-71
#> 9 19168-71
#> 10 19168-71
#> 11 19168-71
#> 12 19168-71
#> 13 19168-71
#> 14 19168-71
#> 15 20998-19
#> 16 20998-19
#> 17 20998-19
#> 18 20998-19
#> 19 4842-62
#> 20 4842-62
#> 21 4842-62
#> 22 4842-62
#> 23 4842-62
#> 24 4842-62
#> 25 4842-62
#> 26 4842-62
#> 27 4842-62
#> 28 4842-62
#> 29 9287-6
#> 30 9287-6
#> 31 9287-6
#> 32 9287-6
#> 33 9287-6
#> TARGETFULLNAME
#> 1 Prostaglandin reductase 2
#> 2 Prostaglandin reductase 2
#> 3 Prostaglandin reductase 2
#> 4 Prostaglandin reductase 2
#> 5 Prostaglandin reductase 2
#> 6 Prostaglandin reductase 2
#> 7 Proline-serine-threonine phosphatase-interacting protein 1
#> 8 Proline-serine-threonine phosphatase-interacting protein 1
#> 9 Proline-serine-threonine phosphatase-interacting protein 1
#> 10 Proline-serine-threonine phosphatase-interacting protein 1
#> 11 Proline-serine-threonine phosphatase-interacting protein 1
#> 12 Proline-serine-threonine phosphatase-interacting protein 1
#> 13 Proline-serine-threonine phosphatase-interacting protein 1
#> 14 Proline-serine-threonine phosphatase-interacting protein 1
#> 15 Nicotinamide riboside kinase 2; Short=NRK 2; Short=NmR-K 2; EC=2.7.1.22
#> 16 Nicotinamide riboside kinase 2; Short=NRK 2; Short=NmR-K 2; EC=2.7.1.22
#> 17 Nicotinamide riboside kinase 2; Short=NRK 2; Short=NmR-K 2; EC=2.7.1.22
#> 18 Nicotinamide riboside kinase 2; Short=NRK 2; Short=NmR-K 2; EC=2.7.1.22
#> 19 Glypican-3
#> 20 Glypican-3
#> 21 Glypican-3
#> 22 Glypican-3
#> 23 Glypican-3
#> 24 Glypican-3
#> 25 Glypican-3
#> 26 Glypican-3
#> 27 Glypican-3
#> 28 Glypican-3
#> 29 Sepiapterin reductase
#> 30 Sepiapterin reductase
#> 31 Sepiapterin reductase
#> 32 Sepiapterin reductase
#> 33 Sepiapterin reductase
#> UNIPROT
#> 1 Q3L8A4
#> 2 Q6MZH8
#> 3 Q8N8N7
#> 4 V9HW32
#> 5 G3V3Y1
#> 6 G3V2R9
#> 7 O43586
#> 8 J3KPG6
#> 9 A0A0S2Z5P3
#> 10 B5BU74
#> 11 B5BUK4
#> 12 O43585
#> 13 O95657
#> 14 H0YKY3
#> 15 B7ZKR3
#> 16 Q52M81
#> 17 Q9NZK3
#> 18 Q9NPI5
#> 19 A0A1S5UZ08
#> 20 Q53H15
#> 21 Q8IYG2
#> 22 B4DTD8
#> 23 P51654
#> 24 C9JLE3
#> 25 G3V1R0
#> 26 I6QTG3
#> 27 Q2L880
#> 28 Q2L882
#> 29 A8K741
#> 30 Q53GI9
#> 31 Q9UBB1
#> 32 D6W5H2
#> 33 P35270